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How should night time be determined and logged in a fast westbound plane? Would you like to answer one of these unanswered questions instead? Updating to the latest versions of everything (R 3.2.4, edgeR 3.12.1) should solve the issue. Sometimes users will install packages in the wrong places or run without appropriate access to the right libraries. .libPaths() is a good check. have a peek at this web-site
Sever-sort an array The difference between 'ping' and 'wget' in relation to hostname resolution Does having a finite number of generators with finite order imply that the group is finite? As a sidenote, I had initially configured RStudio to use ROxygen to make the documentation -- and selected the configuration where ROxygen would write my NAMESPACE file for me, which kept If you have any burning questions, ask them by tomorrow 4 pm EST or put them on ice until next year! Model Design Dear edgeR maintainers, I have some troubles setting up the correct design for my DE experiment.... http://stackoverflow.com/questions/7027288/error-could-not-find-function-in-r
The package itself seems to want to use an internal method that isn't defined because presumably the author didn't do the above. –Andre Luus Jun 23 '15 at 10:02 add a If you are still having trouble, you can execute search() at the console and you'll need to make sure that the tools:rstudio namespace is still there. ADD REPLY • link written 12 months ago by gthm • 0 0 12 months ago by Aaron Lun • 12k Cambridge, United Kingdom Aaron Lun • 12k wrote: Are you ADD REPLY • link written 12 months ago by gthm • 0 Please log in to add an answer.
In this experiment, we have three ... could not find function "%dopar%" Start Watching « Prev Topic » Next Topic 0 votes Hello guys, i am new to R. CummeRbund csHeatmap error Hello, Iâm getting an error message when trying to run csHeatmap from CummerBund. Error In Function_list[[i]](value) : Could Not Find Function "group_by" Parents disagree on type of music for toddler's listening Why did Tarkin undertake this course of action at the end of Rogue One?
However updating R and edgeR to the latest would obviously be preferable. Do you anything about it? Groups Categories 6.7K All Categories193 Announcements 5.8K Ask the GATK team 217 GATK Documentation Guide 29 Tutorials 44 FAQs 12 Presentations 11 Common Problems 32 Methods and Algorithms 19 Dictionary 10 May be some syntax error in adding packages.
flowQ library loading error Dear BioC list, I have a strange error when I try to load flowQ on R 2.13.0. Could Not Find Function "%>%" Dplyr I tried to install the... Parents disagree on type of music for toddler's listening What is a real-world metaphor for irrational numbers? In this case, ANY R command fails, but q()!
Powered by Biostar version 2.2.0 Traffic: 74 users visited in the last hour sign up / log in • about • faq • rss Ask Question Latest News Jobs Tutorials https://www.kaggle.com/c/santander-customer-satisfaction/forums/t/19757/could-not-find-function-sparse-model-matrix In normal use you shouldn't be calling S3 methods like this. Error: Could Not Find Function "%>%" Pipe This might help, but only in very specific cases. –Joris Meys Nov 18 at 10:09 add a comment| protected by Bhargav Rao♦ Sep 28 at 11:04 Thank you for your interest Could Not Find Function "group_by" more hot questions question feed lang-r about us tour help blog chat data legal privacy policy work here advertising info mobile contact us feedback Technology Life / Arts Culture / Recreation
more stack exchange communities company blog Stack Exchange Inbox Reputation and Badges sign up log in tour help Tour Start here for a quick overview of the site Help Center Detailed Check This Out ICU init failed: U_FILE_ACCESS_ERROR while loading library "VariantAnnotation" Hello, I am trying to install the "VariantAnnotation" library and load it. Not the answer you're looking for? ChAMP bailing before analysis complete I am running R version 3.1.2 and launched champ.process() using the default command in the docum... R Could Not Find Function "group_by"
Explain it to me like I'm a physics grad: Greenhouse Effect be killed in the war vs be killed by the war Who were the red-robed citizens of Jedha City? Please click the link in the confirmation email to activate your subscription. edgeR for metagenomic data Hi everyone, I have data from metagenomic experiments: pyrosequencing of the 16S gene (454 GS J... Source Do not use flagging to indicate you disagree with an opinion or to hide a post.
Splitting a line into two A published paper stole my unpublished results from a science fair The female equivalent of "don't break my balls" What is the truth about 1.5V "lithium" Error: Could Not Find Function "group_by" Powered by Biostar version 2.2.0 Traffic: 74 users visited in the last hour Discussions Welcome to the Alteryx Community Setup & Configuration Data Sources Data Preparation & Blending Advanced Analytics Publishing problems with estimateGLMTrendedDisp() Dear Fernando, I can guess what the problem is and, if I'm right, it is a bug and you haven't do...
These issues come up when a job grinds to a halt on a grid because a package wasn't installed. Curious of if anyone else has seen this problem. The difference between 'ping' and 'wget' in relation to hostname resolution Sever-sort an array What is the truth about 1.5V "lithium" cells Is the form "double Dutch" still used? Error Could Not Find Function R User Defined Because it has attracted low-quality or spam answers that had to be removed, posting an answer now requires 10 reputation on this site (the association bonus does not count).
Rcpp Function : SEXP RcppFunction(arg1, arg2=0) {} R Calls : RcppFunction(0) raises the error RcppFunction(0, 0) does not share|improve this answer answered Jul 11 '14 at 8:21 community wiki Math add I think that you'll need to install that package to make use of it using Alteryx: https://cran.r-project.org/web/packages/treemap/index.html On my computer the library where the R installs exist is: C:\Program Files\Alteryx\R-3.2.3\library\ EdgeR GOF non-linear Hi Gordon, I've been trying to use edgeR to analyze some mRNA-seq data. have a peek here This is akin to build testing or unit testing, except it's more like a smoke test to make sure that the very basic stuff works.
Regards Harish KN R code.docx 93 KB Labels: Error Message Reply 0 Stars Share MarqueeCrew Alteryx Certified Partner 06-29-2016 06:52 AM Mark as New Bookmark Subscribe Subscribe to RSS Feed Highlight If you're sure you installed and attached/loaded the right package, type help.search("some.function") or ??some.function to get an information box that can tell you in which package it is contained. Could large but sparsely populated country control its borders? To call such function if you know what you are doing requires the use of :::.
Date Votes 1 comment 0 Hello, The problem here is that the tools:rstudio namespace (where all of the internal RStudio support functions are called from) is not on your search path. Cheers, Mark Reply 1 Star Share HarishKN Meteoroid 06-30-2016 05:49 AM Mark as New Bookmark Subscribe Subscribe to RSS Feed Highlight Print Email to a Friend Report Content Hi Mark, Thank share|improve this answer answered Aug 11 '11 at 14:36 community wiki Iterator 1 Useful considerations to be sure, but more an answer for "Why do I get an error when I always get this error. > library("edgeR") > x <- read.delim("counts",row.names="geneid") > group <- factor(c(1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2)) > y <- DGEList(counts=x,group=group) > y <- calcNormFactors(y) > design <- model.matrix(~group) > y <- estimateDisp(y,design)
graphite functions missing, installed version is out of date I have installed the graphite package according to the instructions---namely, by running biocLite... asked 1 year ago viewed 2403 times active 1 year ago Related 3Objective function in linked prediction models1Finding the similarity between two functions1Function to find the quantile in a vector corresponding require(thePackage) or library(thePackage) (this should be done every time you start a new R session) If you're not sure in which package that function is situated, you can do a few Advice will be greatly appreciated! –Aleksandr Blekh Apr 30 '14 at 9:29 add a comment| 9 Answers 9 active oldest votes up vote 67 down vote accepted There are a few
There is a case study in the User's Guide (the Nigerian samples) showing you how to run it. geom_segment -> -> -> do.call Execution halted DEBUG 16:43:16,006 RScriptExecutor - Result: 1 WARN 16:43:16,006 RScriptExecutor - RScript exited with 1 INFO 16:43:16,059 QCommandLine - Script completed successfully with 245 total To address this, I check the following: Is Fortran installed? (Look for 'gfortran'.) This affects several major packages in R. It appeared that optionnal arguments from the C++ were seen as mandatory by R.
And i cant pin point when it happens. When ever i try to include packages as below the error starts coming. Try our newsletter Sign up for our newsletter and get our top new questions delivered to your inbox (see an example). I would imagine that this problem was temporary as a result of some code you ran and hopefully is fixed now.
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